How to specify the export file fpr PDF reports/exports

For this you’ll have to create a new class which extends the default class DifferencesPDFPresenter.
In this class you’ll have to override the method getExportStream().

public class PersonalDifferencesPDFPresenter extends DifferencesPDFPresenter {
     @Override
     protected OutputStream getExportStream() throws IOException {
         return new FileOutputStream( <export file> );
     }
}

Now create a pdf comparer and add the custom presenter.

new PDFComparer()
            .addPresenter( personalDifferencesPDFPresenter)
            .compare( <file1>, <file2> );

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